PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G175300.1.p

Common Name

PRUPE_ppa026684mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 187aa MW: 21084.2 Da PI: 9.7196

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G175300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.1e-09	15	66	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 + +Er+RR ++++ ++L +l+P+ sk+++ K ls +A YIk+L Prupe.5G175300.1.p 15 KTVERNRRIHMKDLCFKLASLIPPqHSKPSNSKdtLSQQNQFDLASSYIKQL 66 679*******************77755555556999999999***999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.921	9	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-9	13	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-10	13	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-6	15	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-4	17	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKKSSGESSS KLDRKTVERN RRIHMKDLCF KLASLIPPQH SKPSNSKDTL SQQNQFDLAS 60 SYIKQLRERI ENLKERKEKA MRSQLGIDAN STIDADNAMM VRSKLPVLEL RDSGSIIEVM 120 LISGLNKNFM LYEVISVLEE EGAEVISASF STIGDKVFHS LHAQVKISRV GVETSTVWQR 180 LQDLIY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007208890.1	1e-135	hypothetical protein PRUPE_ppa026684mg
TrEMBL	M5W8R3	1e-135	M5W8R3_PRUPE; Uncharacterized protein
STRING	VIT_17s0000g08150.t01	6e-81	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G175300.1.p
Entrez Gene	18777808